PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23799_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 283aa    MW: 30612.3 Da    PI: 8.0741
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23799_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044114136123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++Fs+   L  H  +H
  RrC23799_p1 114 YECKTCNRTFSSFQALGGHRASH 136
                  99**********99999998887 PP
2zf-C2H212.10.00062190212123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F +   L  H+r+H
  RrC23799_p1 190 HECSICGSEFASGQALGGHMRRH 212
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-8113136No hitNo description
PfamPF139121.0E-12113138IPR007087Zinc finger, C2H2
SMARTSM003550.063114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-8185212No hitNo description
PfamPF139121.8E-11189213IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598190212IPR007087Zinc finger, C2H2
SMARTSM003550.031190212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMSQDHHDVG SDQTQIIKGK RTKRQRSSSS AFFVKAATTI TSTSSSAEDG GGGRTVSGEY  60
NSAVSSPVTT TDCTEEEEDM AVCLIMLARG ADLKNSRKNG KVLSSAENSS FFVYECKTCN  120
RTFSSFQALG GHRASHKKPR ASIEEKTKLP LLLTKSSGLV EGQKGNFRVF GSALASQSSN  180
IIITKANKVH ECSICGSEFA SGQALGGHMR RHRTAITAVI PVATMEVSRN STEDETENLS  240
SSIEQRKYLP LDLNLPAPDD DLRESKFQGI VFSTTPALID CHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633836.11e-161PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X41e-139ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0D3C2I61e-159A0A0D3C2I6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CTM21e-159A0A3P6CTM2_BRAOL; Uncharacterized protein
STRINGBo4g165160.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]