PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC235_p10
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NZZ/SPL
Protein Properties Length: 264aa    MW: 28813 Da    PI: 5.7165
Description NZZ/SPL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC235_p10genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NOZZLE273.38.6e-8412641314
      NOZZLE   1 matslffmstdqnsvrnpnellrntrlvvnssgeirte.tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvva.tvgdtssvaaisn 97 
                 mat lff  tdq    npnel+rnt+lv n s e  te ++ks g  pgskt++ k+kkp+lrgmgva+ler +ieeekk+++ a + gdt   aa++ 
  RrC235_p10   1 MATPLFFTPTDQ----NPNELMRNTYLV-NDSSESLTEpPQKSSGGEPGSKTGEPKRKKPALRGMGVARLERLRIEEEKKNMIEAqGGGDTL--AASP- 91 
                 9**********9....5***********.88888899989******************************************6551667776..7666. PP

      NOZZLE  98 tatrlpvpvdrgvvlqgfps.slgs....srilcggvgsgqvmidpvispwgfvetsatthelssisnpqmynassnnrcdtcfkkkrldgdqnnvvrs 191
                 +at  p   d+gvvlqgfps   g+    s +l ggvgsgq+   pv  pwgfv+ s+       i++pq+yn s n+ cd cfkk+r++ dq  vvrs
  RrC235_p10  92 NATPSP---DPGVVLQGFPSyGTGGpntrSMFLGGGVGSGQI---PVYPPWGFVDPSS-------IPDPQVYNPSNNH-CDVCFKKQRINEDQ-HVVRS 175
                 588889...***********644547777889*********9...8999*****9887.......*********9999.**************.9**** PP

      NOZZLE 192 ngggfskytmipppmngydeyllqsdhhqrsqgflydqriaraasvsaasasinpyfneatnltgsreefgsvlegnprngsrgvkeyeffpgkyderv 290
                 ngggfs yt++p        +ll++d  qrsqgf+yd+riar +          py       t +  +fg+    nprn ++ vkey+ffp       
  RrC235_p10 176 NGGGFSEYTVFP--------HLLPPD--QRSQGFFYDHRIARYS--------APPYA-----PTNQWRNFGAE---NPRNETGDVKEYDFFP------- 241
                 **********99........59****..**************87........24663.....2445789**99...****************....... PP

      NOZZLE 291 skvakvaslvgdcspn.tidlslkl 314
                   v  v+++vgdc    tidl+lkl
  RrC235_p10 242 --VSSVSTSVGDCPNTsTIDLTLKL 264
                 ..56799******55479*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF087442.9E-814264IPR014855Plant transcription factor NOZZLE
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATPLFFTPT DQNPNELMRN TYLVNDSSES LTEPPQKSSG GEPGSKTGEP KRKKPALRGM  60
GVARLERLRI EEEKKNMIEA QGGGDTLAAS PNATPSPDPG VVLQGFPSYG TGGPNTRSMF  120
LGGGVGSGQI PVYPPWGFVD PSSIPDPQVY NPSNNHCDVC FKKQRINEDQ HVVRSNGGGF  180
SEYTVFPHLL PPDQRSQGFF YDHRIARYSA PPYAPTNQWR NFGAENPRNE TGDVKEYDFF  240
PVSSVSTSVG DCPNTSTIDL TLKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of sporocyte development (PubMed:10465788). Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors (PubMed:25378179). Required for nucellus and embryo sac development (PubMed:10500234). Plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes during ovule development (PubMed:12183381). Involved in establishing the prospective chalaza of the ovule and in controlling the cell number and the length of the funiculus, and is required for the development of the integuments (PubMed:10976054). Required, with BEL1, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). Involved in controlling stamen identity (PubMed:19726570). May also regulate the morphology of lateral organs by repressing auxin production (PubMed:18557819). {ECO:0000269|PubMed:10465788, ECO:0000269|PubMed:10500234, ECO:0000269|PubMed:10976054, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:18557819, ECO:0000269|PubMed:19726570, ECO:0000269|PubMed:22786869, ECO:0000269|PubMed:25378179}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor AGAMOUS (PubMed:15254538). Regulated by ATXR3/SDG2 via chromatin methylation (PubMed:21037105). Triggered by TGA9 AND TGA10 in anthers (PubMed:20805327). {ECO:0000269|PubMed:15254538, ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:21037105}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482197.11e-151PREDICTED: protein SPOROCYTELESS-like
SwissprotO818362e-76SPL_ARATH; Protein SPOROCYTELESS
TrEMBLA0A397L6W61e-116A0A397L6W6_BRACM; Uncharacterized protein
STRINGBo7g111360.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134351828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27330.12e-71sporocyteless (SPL)
Publications ? help Back to Top
  1. Armenta-Medina A,Huanca-Mamani W,Sanchez-León N,Rodríguez-Arévalo I,Vielle-Calzada JP
    Functional analysis of sporophytic transcripts repressed by the female gametophyte in the ovule of Arabidopsis thaliana.
    PLoS ONE, 2013. 8(10): p. e76977
    [PMID:24194852]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  3. Zhao L, et al.
    Comparative expression profiling reveals gene functions in female meiosis and gametophyte development in Arabidopsis.
    Plant J., 2014. 80(4): p. 615-28
    [PMID:25182975]
  4. Yuan L,Sundaresan V
    Spore formation in plants: sporocyteless and more.
    Cell Res., 2015. 25(1): p. 7-8
    [PMID:25512340]
  5. Picó S,Ortiz-Marchena MI,Merini W,Calonje M
    Deciphering the Role of POLYCOMB REPRESSIVE COMPLEX1 Variants in Regulating the Acquisition of Flowering Competence in Arabidopsis.
    Plant Physiol., 2015. 168(4): p. 1286-97
    [PMID:25897002]
  6. Mao Y, et al.
    Development of germ-line-specific CRISPR-Cas9 systems to improve the production of heritable gene modifications in Arabidopsis.
    Plant Biotechnol. J., 2016. 14(2): p. 519-32
    [PMID:26360626]
  7. Rojas-Gracia P, et al.
    The parthenocarpic hydra mutant reveals a new function for a SPOROCYTELESS-like gene in the control of fruit set in tomato.
    New Phytol., 2017. 214(3): p. 1198-1212
    [PMID:28134991]
  8. Zhao F, et al.
    Phosphorylation of SPOROCYTELESS/NOZZLE by the MPK3/6 Kinase Is Required for Anther Development.
    Plant Physiol., 2017. 173(4): p. 2265-2277
    [PMID:28209842]
  9. Bi H,Fan W,Zhang P
    C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1689
    [PMID:29021807]