PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23550_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 210aa    MW: 23083.8 Da    PI: 5.204
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23550_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19115165255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp     k +r++lg+f tae+Aa a+++a+ k++g
  RrC23550_p1 115 HYRGVRQRP-WGKFAAEIRDP---ArKGARVWLGTFETAEDAALAYDKAAFKMRG 165
                  8********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-32114173No hitNo description
Gene3DG3DSA:3.30.730.105.3E-33114173IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23115175IPR016177DNA-binding domain
SMARTSM003802.2E-39115179IPR001471AP2/ERF domain
PROSITE profilePS5103224.5115173IPR001471AP2/ERF domain
PfamPF008471.0E-13115165IPR001471AP2/ERF domain
PRINTSPR003673.6E-11116127IPR001471AP2/ERF domain
PRINTSPR003673.6E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MYGQGEITAA AESDYALLES IRRHLLGRDD ELQFSETIPG SCFTESWGDL PLKENDSEDM  60
LVYGILNDAF ETSSPSSDLS CLSDVNDFSA VKMEPSENVA AEAEKPKAVT ANGKHYRGVR  120
QRPWGKFAAE IRDPARKGAR VWLGTFETAE DAALAYDKAA FKMRGSRALL NFPLRINSGE  180
PGPSSSGNGK PKRRRKTEKV SSELSQVKCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-42111180170ATERF1
3gcc_A4e-42111180170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892611e-168AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594196.11e-116PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 2
RefseqXP_013693573.11e-116ethylene-responsive transcription factor 2-like
RefseqXP_013703691.11e-116ethylene-responsive transcription factor 2-like
SwissprotO803382e-97EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A0D3D9T01e-114A0A0D3D9T0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EXB11e-114A0A3P6EXB1_BRAOL; Uncharacterized protein
STRINGBo7g077390.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-75ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]