PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2348_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 37400.7 Da PI: 6.1599 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.6e-14 | 151 | 197 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L RrC2348_p3 151 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 197 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.85 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-11 | 151 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 152 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-14 | 152 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-12 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.61E-5 | 161 | 200 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 6.3E-4 | 237 | 292 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MNNIQNYQSD LFFHQLISHN HHQDPSQSES FGGPSNNAGS GSTIFSQDTV SPIWPTLVQP 60 PFDPFPPPSQ ASFYGSFFHR SRAHHQGLQF GYEGFGGATP ATHHHHEQLR ILSEALGPVV 120 QAGSGPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK LRSILPNTTK 180 TDKASLLAEV IQHVKELKRE TSVISETNLV PTESDELTVA FTEEEETGDG RFVIKASLCC 240 EDRSDLLPDM IKTLKAMRLK TLKAEITTVG GRVKNVLFVT GDEGSGEEEM EEYCIGTIEE 300 ALKAVMDKSN VEESSSSGNA KRQRMSSHNA ITIVEQQHH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 161 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072161 | 0.0 | AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. | |||
GenBank | AY122983 | 0.0 | AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453071.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 0.0 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A397YX07 | 0.0 | A0A397YX07_BRACM; Uncharacterized protein | ||||
STRING | Bra004338.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7048 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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