PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC2344_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 28301.4 Da PI: 8.5829 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 22 | 72 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d + ++ r +lg+fgtaeeAa+a+++a+ l+g RrC2344_p2 22 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFGTAEEAARAYDEAACLLRG 72 699*******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-14 | 22 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.50E-33 | 22 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.8E-28 | 23 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-19 | 23 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.454 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-38 | 23 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MEQKTTQKQK TKEKSKGNNK KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFGTAEEAA 60 RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK QSMKQQQKQQ NKPVSSFSEC 120 NINYTSTATS PTASNTTTVM QPNDVYRPDS SAMLQQETES VHFPYYCPFD SGFNHQVPST 180 QGGEETHGNF NSSNSTDQHL GLADLQREIS SSLYAMNGAT YYNNMNAEYA IFDPTDPIWD 240 LPSLSQLFCP I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 23 | 89 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469641.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | Q6J9S1 | 1e-127 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A078HBS0 | 1e-128 | A0A078HBS0_BRANA; BnaC09g37870D protein | ||||
TrEMBL | A0A0D3EDY7 | 1e-128 | A0A0D3EDY7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6A912 | 1e-128 | A0A3P6A912_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6EQ65 | 1e-128 | A0A3P6EQ65_BRAOL; Uncharacterized protein | ||||
STRING | Bostr.26527s0221.1.p | 1e-133 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7526 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-103 | related to AP2 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|