PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23245_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 159aa    MW: 17967.9 Da    PI: 9.9441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23245_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.4e-1759109255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  RrC23245_p1  59 KYRGVRRRP-WGKFAAEIRDPAK--KGSRVWLGTFESDVDAARAYDCAAFKLRG 109
                  8********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-3158118IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2259118IPR016177DNA-binding domain
PfamPF008479.8E-1259109IPR001471AP2/ERF domain
PROSITE profilePS5103224.73759117IPR001471AP2/ERF domain
SMARTSM003808.0E-3659123IPR001471AP2/ERF domain
CDDcd000189.34E-2859117No hitNo description
PRINTSPR003672.6E-136071IPR001471AP2/ERF domain
PRINTSPR003672.6E-1399119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGDFDFDASS VSGLWCIEPV MNQVPKQEPD SSSAHETDQS VSTRKKTKRF QKEEEEQRKY  60
RGVRRRPWGK FAAEIRDPAK KGSRVWLGTF ESDVDAARAY DCAAFKLRGR KAVLNFPLDA  120
GKYEAPANSG RKRKRSDVKE ELQRSQSNSS TSLSDGETT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2858118464ATERF1
3gcc_A4e-2858118464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507111e-129AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468394.11e-102PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY051e-76EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A078FLW08e-97A0A078FLW0_BRANA; BnaC02g01530D protein
TrEMBLA0A0D3AI378e-97A0A0D3AI37_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1K38e-97A0A3P6D1K3_BRAOL; Uncharacterized protein
STRINGBo2g008700.11e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-68ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]