PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2321_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 268aa MW: 29470.4 Da PI: 10.026

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2321_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	92.5	5.2e-29	142	198	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VN+KQy++I++RRq+Rak++ ++k+++ ++py+h+SRh hA+rRpRgsgGrF RrC2321_p3 142 GTIFVNSKQYHGIIRRRQSRAKAALKNKVSSCRKQPYMHHSRHLHAMRRPRGSGGRF 198 689************************9999*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.3E-31	139	201	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.992	140	201	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.5E-24	143	198	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.1E-20	143	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.1E-20	175	198	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MQTEYRKERE EHFSPPPQIS CLWNIAFGSP TLTTESLSSD SLAGVKVVTP ETKSEKGVDK 60 QSSATLLTFS PGGGKSSIDV SKPHAAFTVQ PACFEFGFAQ PTIYTKHPDH VEPYYGVVSG 120 YGSQISPGRV MMPLKMETEE DGTIFVNSKQ YHGIIRRRQS RAKAALKNKV SSCRKQPYMH 180 HSRHLHAMRR PRGSGGRFLN AKKADAALQS KPSTSQSSEV FHPKNGTIVS DSDVTSMDHF 240 LSSSVHSNVS NMVIPSKWIA AAMDILKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-14	144	214	5	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A	1e-14	141	203	2	64	HAPB protein
4g92_A	1e-14	141	203	2	64	HAPB protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443987.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
Swissprot	Q8LFU0	1e-120	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A3P6E4V7	1e-148	A0A3P6E4V7_BRAOL; Uncharacterized protein
STRING	Bo9g176100.1	1e-147	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-110	nuclear factor Y, subunit A10

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]