PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC23189_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 216aa MW: 24224.3 Da PI: 8.946 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H+++H RrC23189_p1 42 YTCSFCGRDFKSAQALGGHMNVH 64 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.1E-7 | 39 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 40 | 66 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.071 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.5E-6 | 42 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSMKLRPVAA RQSLWPFGRD RAFAEIEEYG GGGGCMWPPR SYTCSFCGRD FKSAQALGGH 60 MNVHRRDRAR LKQQSLSSSS TEQATPLDCD HQQQVQKQHE VLDVGPKFPF QGDSRKPSGT 120 KREISDFGNS NVLESSMKRF EHYNDDVQTD LSIGLLSSEF DPRQKQLING FSKKAKTDVT 180 RLPVMLGLVI GVSKINGHHE ELDLELRLGA HPPKIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 37 | 64 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 37 | 64 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018475593.1 | 1e-160 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
Swissprot | Q9LHS9 | 1e-116 | RBE_ARATH; Probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A397XP14 | 1e-116 | A0A397XP14_BRACM; Uncharacterized protein | ||||
STRING | Bra009160.1-P | 1e-116 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5128 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 1e-119 | C2H2 family protein |
Publications ? help Back to Top | |||
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