PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2315_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 153aa    MW: 17480.6 Da    PI: 8.4469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2315_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15e-144493256
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 y+GVr++ +   WvAeIr        r+r +lg+f+taeeAa a+++ +  l+g+
  RrC2315_p3 44 LYRGVRQRQW--EWVAEIRKqR----SRARLWLGTFDTAEEAATAYDRQAFILRGH 93
                59****9988..*****99933....25********************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-2643102No hitNo description
Gene3DG3DSA:3.30.730.103.4E-2744102IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1844101IPR016177DNA-binding domain
SMARTSM003802.7E-2944106IPR001471AP2/ERF domain
PROSITE profilePS5103219.07244100IPR001471AP2/ERF domain
PfamPF008478.3E-104592IPR001471AP2/ERF domain
PRINTSPR003677.1E-84556IPR001471AP2/ERF domain
PRINTSPR003677.1E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MVKKRVNTEI DFDEELNLCI PKRQVESKPK KNQESVQPYS ATKLYRGVRQ RQWEWVAEIR  60
KQRSRARLWL GTFDTAEEAA TAYDRQAFIL RGHNATLNFP EHYVNKEDQK QPETLQANKV  120
KLGSSEVAVS DGGVGDGMAE AWLNAVTSGW SPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-17451031575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894414e-90AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481042.13e-66PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J32e-59ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A397L9B04e-63A0A397L9B0_BRACM; Uncharacterized protein
STRINGBo7g111910.15e-63(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.16e-62ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]