PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2315_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 191aa    MW: 21706.9 Da    PI: 4.641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2315_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-184393256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ +  l+g+
  RrC2315_p2 43 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFILRGH 93
                59****999.**********954...4********************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-3242102No hitNo description
SuperFamilySSF541716.54E-2343101IPR016177DNA-binding domain
PROSITE profilePS5103223.06443100IPR001471AP2/ERF domain
SMARTSM003802.3E-3643106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3243102IPR001471AP2/ERF domain
PRINTSPR003671.4E-114455IPR001471AP2/ERF domain
PfamPF008477.2E-134492IPR001471AP2/ERF domain
PRINTSPR003671.4E-116682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQGQNQMISF SPQQPEQQYM TKYWSDTMNL SQESVQPYSA TKLYRGVRQR QWGKWVAEIR  60
KPRSRARLWL GTFDTAEEAA MAYDRQAFIL RGHNATLNFP EHYVNKEVEL HGETDASSSL  120
DQKQSETPQP YESKEEAMSN GGVEDGMAEA WLNAVTAGWG PESPLWDDLD SSQFSQSSSS  180
SSASCPMRPF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2142100463ATERF1
3gcc_A5e-2142100463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894410.0AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596598.11e-116PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J34e-90ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A397L9B01e-120A0A397L9B0_BRACM; Uncharacterized protein
STRINGBo7g111910.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.19e-91ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]