PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC23154_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 106aa MW: 12198.9 Da PI: 10.0907 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.8e-18 | 14 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W++++++ g R++k+c++rw +yl RrC23154_p1 14 RGLWSPEEDEKLINYINTYGHGCWSSVPKHAGiyiGFRCGKSCRLRWINYL 64 789**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-27 | 6 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.865 | 9 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-15 | 13 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-17 | 14 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.71E-23 | 16 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.44E-14 | 17 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-8 | 68 | 91 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN TYGHGCWSSV PKHAGIYIGF RCGKSCRLRW 60 INYLRPDLKR GSFSPQEAAL IIELHSILGN RQSNFTRPRQ LSSPNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-17 | 14 | 97 | 7 | 86 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519588 | 1e-100 | AY519588.1 Arabidopsis thaliana MYB transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ446661 | 1e-100 | DQ446661.1 Arabidopsis thaliana clone pENTR221-At3g13890 myb family transcription factor (At3g13890) mRNA, complete cds. | |||
GenBank | DQ653083 | 1e-100 | DQ653083.1 Arabidopsis thaliana clone 0000019124_0000013170 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019092222.1 | 4e-57 | PREDICTED: transcription factor MYB26-like | ||||
Swissprot | Q9SPG3 | 4e-57 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A3P6FZQ1 | 2e-58 | A0A3P6FZQ1_BRAOL; Uncharacterized protein | ||||
STRING | Bra021515.1-P | 6e-59 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.1 | 2e-59 | myb domain protein 26 |
Publications ? help Back to Top | |||
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