PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23110_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 174aa    MW: 19078.6 Da    PI: 9.7287
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23110_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA43.69.5e-14136173236
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrk 36 
                   ++YVN+KQy++I++RRq+Rak+++   ++kl++k+rk
  RrC23110_p1 136 GTIYVNSKQYHGIIRRRQSRAKAAAildQNKLSSKCRK 173
                  689*********************9999****999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115218.686134174IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-9137172IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDSDSFA GVKARSAGGI EQGVNKQSNS  60
ASHFAFSLGE VKSSRVVPKP HGSAFSMQPP YLELGFSQPQ IYTKYPCVEQ QYYGVLSAYG  120
PHSSVMLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA ILDQNKLSSK CRKV
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134849.11e-116PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
SwissprotQ9M9X44e-97NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLM4CAD51e-115M4CAD5_BRARP; Uncharacterized protein
STRINGBra001164.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-99nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]