PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC23087_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 289aa MW: 31695 Da PI: 8.0854

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC23087_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103.1	2.3e-32	1	96	6	98
DUF573 6 lwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lw++eDei lL+G++d+ + ++g s++ d+ fye++k+++ ++++k+qlveK+rrLKkK+++ ++k+ sg+e+ f+++hdq +f++s+kiW++ RrC23087_p1 1 LWTDEDEIELLRGFLDYiTCHRGGsSSHPpDTAPFYEIIKSKLRLEFNKNQLVEKLRRLKKKYRNVMSKMGSGREVLFKSPHDQATFDISRKIWNQ 96 7**************7667776355558**************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.2E-30	1	95	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
LWTDEDEIEL LRGFLDYITC HRGGSSSHPP DTAPFYEIIK SKLRLEFNKN QLVEKLRRLK 60 KKYRNVMSKM GSGREVLFKS PHDQATFDIS RKIWNQSGKI IGFEDIIEEP CGGSQHTNVD 120 VDSDNNVLEK KGTASRKRSR SRIGKMDEDN NKPISLSDGP MASGATTTNE NLAEFSDGRN 180 LGGLIEETVK SCVSPLIKEM MNGTVGMMMA AVGGYPGGGG AHAVGVLSPM LIPNLGFGGG 240 GGVKGGGVGD ERWRRQQILE LEVYSRRLEL VQEQIRATVH ELKTMPSGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	KRSRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007627	4e-45	AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBank	AK117998	4e-45	AK117998.1 Arabidopsis thaliana At5g28040 mRNA for unknown protein, complete cds, clone: RAFL19-20-B12.
GenBank	BT005356	4e-45	BT005356.1 Arabidopsis thaliana At5g28040 mRNA, complete cds.
GenBank	CP002688	4e-45	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456640.1	1e-176	PREDICTED: probable transcription factor At5g28040
Swissprot	F4K5T4	1e-144	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A3N6SGZ6	1e-148	A0A3N6SGZ6_BRACR; Uncharacterized protein (Fragment)
STRING	AT5G28040.1	1e-143	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-117	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]