PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2290_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 231aa    MW: 26649.3 Da    PI: 9.8417
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2290_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-1327118286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k+  ++      s++ +f++l+
  RrC2290_p3  27 WSEEATFTLIQAWGRRYVDLGRGSLRQKHWQEVADAVndrhfntgrhvsaAKSQPYRTDVQCKNRIDTLKKKYKTEKAKPSS------SSWCFFERLD 118
                 ************************************************997777789*******************998886......5799**9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2425119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKDAVNDSFS PGSSRPSPST LSREDYWSEE ATFTLIQAWG RRYVDLGRGS LRQKHWQEVA  60
DAVNDRHFNT GRHVSAAKSQ PYRTDVQCKN RIDTLKKKYK TEKAKPSSSS WCFFERLDFL  120
IGEGEGSSCR ELARAILKLG EVYERIESAK QGMMIELEKQ RMEAAKEIEL QRMNMLMDMQ  180
MELEKSKLGK RRAASGYLST LDYVSFKVRS CSIRLWRKLY YGDAKGGNGW I
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892211e-102AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489305.11e-68PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG87e-26ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1J3DXM46e-64A0A1J3DXM4_NOCCA; Trihelix transcription factor ASIL2
TrEMBLA0A1J3HEN39e-64A0A1J3HEN3_NOCCA; Trihelix transcription factor ASIL2
TrEMBLA0A1J3IJ848e-64A0A1J3IJ84_NOCCA; Trihelix transcription factor ASIL2
STRINGAT3G58630.13e-64(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.12e-51sequence-specific DNA binding transcription factors