PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2275_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRF

Protein Properties

Length: 385aa MW: 43025.2 Da PI: 7.5375

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2275_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.5	3.2e-25	146	190	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+ RrC2275_p1 146 DPEPGRCKRTDGKKWRCSRDVVGGHKYCDRHIHRGRNRSRKPVET 190 79****************************************996 PP
2	QLQ	53.7	6.1e-19	78	112	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k RrC2275_p1 78 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKK 112 *********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	8.6E-12	76	112	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.412	77	112	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.7E-13	78	110	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.647	146	190	IPR014977	WRC domain
Pfam	PF08879	3.8E-21	147	189	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDLQLKQWRS QQQNESEEQG SATKMSNFFF DQIQSQNATS DAALPLFVPE PTSSSSFSCL 60 TPDSSSSSTR HLKMGNFFSW AQWQELELQA LIYRYMLAGA SVPQELLLPI KKSLFHQSPL 120 NFLQHPLQHN FSHHQASWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVGGH KYCDRHIHRG 180 RNRSRKPVET NAKTATTNAA ATNAASSFVL GEELGHGPNN LFFSSGSSHH SSQHLHLNNH 240 QSCSSDIKQE NNNNNNNKRP YGVHSGFSNG RSDDGHILRP FFDDWPRSAD STSSPMSSST 300 CHLSISMPGN PSSDVSLKLS TGNEEEEEEA NMRNKNEREQ QQSMNWWSSG GNHNNMGGPL 360 AEALRSASST SSVLQQMGIS TQVFH

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDLQLKQWRS QQQNESEEQG SATKMSNFFF DQIQSQNATS DAALPLFVPE PTSSSSFSCL  60
TPDSSSSSTR HLKMGNFFSW AQWQELELQA LIYRYMLAGA SVPQELLLPI KKSLFHQSPL  120
NFLQHPLQHN FSHHQASWYW GRGAMDPEPG RCKRTDGKKW RCSRDVVGGH KYCDRHIHRG  180
RNRSRKPVET NAKTATTNAA ATNAASSFVL GEELGHGPNN LFFSSGSSHH SSQHLHLNNH  240
QSCSSDIKQE NNNNNNNKRP YGVHSGFSNG RSDDGHILRP FFDDWPRSAD STSSPMSSST  300
CHLSISMPGN PSSDVSLKLS TGNEEEEEEA NMRNKNEREQ QQSMNWWSSG GNHNNMGGPL  360
AEALRSASST SSVLQQMGIS TQVFH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018491813.1	0.0	PREDICTED: growth-regulating factor 4
Swissprot	Q8L8A7	0.0	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	A0A3N6S4R9	0.0	A0A3N6S4R9_BRACR; Uncharacterized protein
STRING	Bo8g082350.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-149	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]