PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2274_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 339aa    MW: 36783.1 Da    PI: 6.9695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2274_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.9e-062462851054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  RrC2274_p1 246 KARKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 285
                 67889999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.741236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-4242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-10246297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-11246300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.99E-6248290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLQENLNLDA TSNANAVQES DSSHHQALWR DTHTNNSDFK PQLNMTSSNR GFFLEHQFSP  60
HGSSSTDSST VTCQGFGVDN SSNTLYGTST TPSSSSAMFH QGAGFNLPGS SDQQPSRNHH  120
QPNLGYSQFG SSTGNYDQMA TALPSTWFSR SSPPKPHSPL RFSNNATFWN PAATAGNVGP  180
THHDASPNFF PALQPPQIHA PTSFDEQKNI TKVPNSRSNE AKRDGGGQPA AKRAKSEAPS  240
PSPASKARKE KMGDRIAALQ QLVSPFGKTD AASVLSEAIE YIKFLHQQVS SDHHKELEVS  300
EEPDLRSRGL CLVPVSSIFP VTHDTTVDFW TPTFGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491365.10.0PREDICTED: transcription factor bHLH123-like isoform X2
SwissprotQ8GXT31e-161BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078H4H00.0A0A078H4H0_BRANA; BnaC03g41710D protein
TrEMBLA0A0D3BCF90.0A0A0D3BCF9_BRAOL; Uncharacterized protein
STRINGBo3g076150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-146bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]