PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC22617_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 26248.8 Da PI: 4.8656 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 1 | 23 | 24 | 47 |
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Iar+++ gRt++++k++w+++ RrC22617_p1 1 WSAIARKLP-GRTDNEIKNHWNTH 23 *********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 4.81E-7 | 1 | 24 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-12 | 1 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.14E-7 | 1 | 33 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.478 | 1 | 28 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-6 | 1 | 23 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
WSAIARKLPG RTDNEIKNHW NTHIKKRLVK KGIDPLTHKS HSGKSSDHHE NDDQKSNKNN 60 ALGSLSAQFL NRVANRFGKR INHSVLSDII GSGGPFTSHT TPTTSASEWE KSSSSFSTPN 120 SADLLINENM ILDATSLSSS TFSSDTSDPL MFAHIFDDIE DMTPFSSRFV NDVVSHNDED 180 LLMLDEYCLE NSSFMRELTM ILQEDKIETT AFNDSHVISV SEVDDSFEGI DNYFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ670120 | 0.0 | KJ670120.1 Brassica napus MYB transcription factor 122 (MYB122.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468930.1 | 1e-125 | PREDICTED: transcription factor MYB122-like | ||||
Swissprot | Q9C9C8 | 4e-94 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | A0A397YRF0 | 1e-109 | A0A397YRF0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DHG2 | 1e-109 | M4DHG2_BRARP; Uncharacterized protein | ||||
STRING | Bra015939.1-P | 1e-109 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 5e-78 | myb domain protein 122 |