PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC22497_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 294aa    MW: 33304.8 Da    PI: 7.3778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC22497_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-172471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++++  +G ++W+++++  g+ R++k+c++rw +yl
      RrC22497_p1 24 RGLWSPEEDEKLLRYIITHGHPSWSSVPKLAGLERCGKSCRLRWINYL 71
                     788*******************************************97 PP
2Myb_DNA-binding56.56.4e-1877120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++TteE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
      RrC22497_p1  77 RGSFTTEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 120
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-241674IPR009057Homeodomain-like
PROSITE profilePS5129416.7061971IPR017930Myb domain
SuperFamilySSF466899.36E-2922118IPR009057Homeodomain-like
SMARTSM007173.3E-132373IPR001005SANT/Myb domain
PfamPF002492.3E-152471IPR001005SANT/Myb domain
CDDcd001676.37E-112771No hitNo description
PROSITE profilePS5129426.31172126IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2675126IPR009057Homeodomain-like
SMARTSM007171.4E-1576124IPR001005SANT/Myb domain
PfamPF002494.3E-1677120IPR001005SANT/Myb domain
CDDcd001672.94E-1179119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRGEWEMKRD KMGHRCCGKH KVNRGLWSPE EDEKLLRYII THGHPSWSSV PKLAGLERCG  60
KSCRLRWINY LRPDLKRGSF TTEEEQTIID VHRILGNKWA QIAKHLPGRT DNEVKNFWNS  120
CIKKKLLSQG LDPSTHNLMP SHKRSAASSN NNIPKLSKTK SIMTNTTFDL STTAFSITNL  180
NPHTSTKPNR VKSPIRTPIP SEPIIPISDT MSSLLDDEHM IPNWSDVDGM APIHEESPMF  240
SSEKAVVGVD DDDLNVDILF NTPSSTTFDH DFASIFSSAM SIDFNPMDDL GWTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30241267108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893350.0AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437184.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A078I1B70.0A0A078I1B7_BRANA; BnaA01g30350D protein
TrEMBLA0A0D3AE630.0A0A0D3AE63_BRAOL; Uncharacterized protein
TrEMBLA0A398AYS50.0A0A398AYS5_BRACM; Uncharacterized protein
TrEMBLA0A3P6FYC60.0A0A3P6FYC6_BRAOL; Uncharacterized protein
TrEMBLM4FE180.0M4FE18_BRARP; Uncharacterized protein
STRINGBra039339.1-P0.0(Brassica rapa)
STRINGBo1g138990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-153myb domain protein 67