PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2242_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 606aa    MW: 66771 Da    PI: 5.217
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2242_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.16.1e-962366052374
        GRAS   2 velLlecAeavssgdle.....laqalLarlselaspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                 +e+Ll++Ae + +++++     laq +Larl+++ s + +       p+qR+a+++te L + +++         +    s++n + ++aa+++fse+s
  RrC2242_p2 236 IEQLLNAAELIGNSNNNgdhtvLAQGILARLNHHLSYNNNnnnnknpPFQRAASHITESLLSLINN--------ASQPLISPENLILRIAAYRTFSETS 326
                 789********998777777789**********966555445678889*****************9........22222334579************** PP

        GRAS  89 PilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                 P+l+f ++taNq Ile+ + e   +r+HiiDfd+++G+QW +L+q+LasR+ + + sl+iT++++p s+  ++ el+ t+e+L++fA e+++pfe+++l
  RrC2242_p2 327 PFLQFVNFTANQSILESCNDElgfDRIHIIDFDVGYGGQWSSLMQELASRRrNRASSLKITVFAPPPSTvsDEFELRFTEENLRSFAGEVKIPFEIELL 425
                 *******************99999************************99857778*********9988899**************************9 PP

        GRAS 182 vakrledlele..eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                   + l +  ++  +Lr +++Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y+++l++sl+a+   +
  RrC2242_p2 426 SLELLLNPAYWpvSLRSSEKEAVAVNLPVNSVVSG--------YLPLILRFIKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTTLLESLDAN---Q 513
                 6666666566611566666*********9655554........5677************************************************...8 PP

        GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 s+e+ +vEr++++++i++++++++++     e+   Wr+ + ++GF+pv ls++a++qa++ll++ +++g++ve+++gslv++W++++Lv+vSaW+
  RrC2242_p2 514 SHEDESVERFWVQPSIEKLLMKRHRW----IERSPPWRSLFAQCGFSPVGLSQTAEAQAECLLQRSPVRGFHVEKRQGSLVMYWQRKELVTVSAWK 605
                 9*************************....89999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.211209585IPR005202Transcription factor GRAS
PfamPF035142.1E-93236605IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MPLSFERFQG EGAFGVVSSL CSDPQKIWFN QDKTGAGQDL GYVVGGVLPE PTSVLDALRS  60
PSPLASHSST TTTMTLSSSH GGGAVTTATT TAGDDKCSQM GLDDLDGGQE QSILRLIMDP  120
GSAFGVFDPG FGLGSGSVSV NENSNPLLSC SFPYQEELMF SNQPSSPPAK RFNPGSHQPV  180
YPFPDPDPGH DPFLVRRQQQ FQLPFQFHQQ QLPSSSSSLA PVPAPGMAGD DQTVIIEQLL  240
NAAELIGNSN NNGDHTVLAQ GILARLNHHL SYNNNNNNNK NPPFQRAASH ITESLLSLIN  300
NASQPLISPE NLILRIAAYR TFSETSPFLQ FVNFTANQSI LESCNDELGF DRIHIIDFDV  360
GYGGQWSSLM QELASRRRNR ASSLKITVFA PPPSTVSDEF ELRFTEENLR SFAGEVKIPF  420
EIELLSLELL LNPAYWPVSL RSSEKEAVAV NLPVNSVVSG YLPLILRFIK QISPNVVVCS  480
DRGCDRNDAP FPNAVIHALQ YHTTLLESLD ANQSHEDESV ERFWVQPSIE KLLMKRHRWI  540
ERSPPWRSLF AQCGFSPVGL SQTAEAQAEC LLQRSPVRGF HVEKRQGSLV MYWQRKELVT  600
VSAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2931960580375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894450.0AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444958.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A078JM970.0A0A078JM97_BRANA; BnaCnng57010D protein
TrEMBLA0A3P6BK580.0A0A3P6BK58_BRACM; Uncharacterized protein
STRINGBo6g074360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]