PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2241_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 390aa    MW: 43553.8 Da    PI: 7.3464
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2241_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-082302671954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  RrC2241_p4 230 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 267
                 554458******************************88 PP
2BELL129.31.3e-4190161172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  RrC2241_p4  90 ERQELQNKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGYGAAKPYTALALQTISRHFRCLRDAISGQI 161
                 79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-6730159IPR006563POX domain
PfamPF075261.5E-4737158IPR006563POX domain
PROSITE profilePS5007111.515208271IPR001356Homeobox domain
SMARTSM003891.5E-8211275IPR001356Homeobox domain
CDDcd000862.12E-10211272No hitNo description
SuperFamilySSF466897.7E-17212278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-27214277IPR009057Homeodomain-like
PfamPF059206.8E-18228267IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMRPTTGQGL SLGLSSQTET SRGGNNEYAT QVVSGFHNSK YLKAAQELLD EAVNVKKALK  60
QFQPEGDKIE EHREKNLQES SMNPDLPPSE RQELQNKLSK LLSILDEVDR RYKQYYHQMQ  120
IVVSSFDVIA GYGAAKPYTA LALQTISRHF RCLRDAISGQ ILVIRRSLGG EVDGLGGGGG  180
VGISRLRNVD QQVRQQRALQ RLGVMQPPHA WRPQRGLPDS SVLLLRAWLF EHFLHPYPKD  240
SDKIMLARQT GLSRGQVSNW FINARVRLWK PMVEEMYKEE FTDALEENAT TLSSGNNRPE  300
TTESQEQHQL VSSSSNGGGD DRFMMVTEMT RNGSGGMSLT LGIPDTRGND VPMSSDSYEN  360
SIQGTSFQYL NSGNGQHRLG SAQFLQDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14217275563Homeobox protein Meis2
3k2a_B1e-14217275563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492363.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A3N6QMS30.0A0A3N6QMS3_BRACR; Uncharacterized protein (Fragment)
STRINGBra013076.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]