PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC22249_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 137aa    MW: 16085.5 Da    PI: 10.8676
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC22249_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind44.93.1e-141298297
                  HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97
                  F + lyei++d++ + +isws ++++sfvv+d eef k++Lpk ++  +nf+ Fv  +    F+++ +            eF h++F +g+  ll+++
   RrC22249_p2 12 FFTDLYEIVNDHSSDAIISWSnNSNSSFVVWDVEEFCKRILPKsVWFGRNFSEFVSEIRYHRFQRIGR-----------LEFGHENFARGRPWLLKRM 98
                  999******************666799**************87578899**********999998865...........5689999999998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-18596IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-168101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.57E-19998IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.1E-161298IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAHTSATGSN SFFTDLYEIV NDHSSDAIIS WSNNSNSSFV VWDVEEFCKR ILPKSVWFGR  60
NFSEFVSEIR YHRFQRIGRL EFGHENFARG RPWLLKRMMP SKTLDDKFRA KLKAKRDKAK  120
AKKARAKVVR LLENLQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123KAKAKKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479723.17e-70PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM4ENH12e-52M4ENH1_BRARP; Uncharacterized protein
STRINGBra030341.1-P3e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.15e-16Winged helix-turn-helix transcription repressor DNA-binding