PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2219_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 326aa MW: 36279.6 Da PI: 7.3831 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.6 | 7.9e-37 | 52 | 167 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i el+ s++ + +a + +++ +s RrC2219_p3 52 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAAADSISELPPI-ISTS-FD---------------QALSLSKSACSS 133 689************************************************************9.3333.11...............122223334455 PP TCP 101 qksaasalnlak.esrakarararertrekmrik 133 +s++s+l+l++ esr kar+rarert++++ ++ RrC2219_p3 134 GTSESSMLSLSRtESRGKARERARERTAKDKDKD 167 6777778********************9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.2E-33 | 53 | 135 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.802 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.833 | 146 | 164 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEVDDDIEAQ QQEQQQTSRK LQRISSDNNN DKTVMRDWNN PSSRIIRVSR ASGGKDRHSK 60 VLTSKGLRDR RIRLSVATAI QFYDLQDRLG FDQPSKAVEW LINAAADSIS ELPPIISTSF 120 DQALSLSKSA CSSGTSESSM LSLSRTESRG KARERARERT AKDKDKDLQN APDNQSSFTQ 180 LLTGGFDEPN RNWIGGSSSD CFNPVQLLPS PSSSSSLHHH YNNTTNHRQE TSLNHHFSFV 240 PDYNFGISSS DSPGAAGGCY TSRGTLQSNS HSLFLNNVNQ RPISFMATPP PLDHHNHQLP 300 AAFDGRLYLY YGEGNRSSDD KEKDGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-21 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-21 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00169 | DAP | Transfer from AT1G30210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468446.1 | 0.0 | PREDICTED: transcription factor TCP24-like | ||||
Refseq | XP_018468453.1 | 0.0 | PREDICTED: transcription factor TCP24-like | ||||
Swissprot | Q9C758 | 1e-143 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | M4EU83 | 0.0 | M4EU83_BRARP; Uncharacterized protein | ||||
STRING | Bra032365.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13840 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-123 | TCP family protein |
Publications ? help Back to Top | |||
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