PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2216_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 304aa MW: 35056.4 Da PI: 9.306

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2216_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.1	1.5e-48	22	150	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp +++ +eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s ++ RrC2216_p1 22 LPGFRFHPTDEELVGFYLSKKVLLKKpSKIDEIISHIDIYKFDPWDLP-RLRDTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDgsSK 119 59*****************877764888889***********.7778899**********************************96666 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++glkktLv+y g+a kg+ktdW+mhe+rl RrC2216_p1 120 AVIGLKKTLVYYIGSAGKGSKTDWMMHEFRL 150 77*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.51	21	185	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-50	22	185	IPR003441	NAC domain
Pfam	PF02365	1.6E-24	23	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MMGSRDKRRG EQEEKEEQKL KLPGFRFHPT DEELVGFYLS KKVLLKKPSK IDEIISHIDI 60 YKFDPWDLPR LRDTEKESYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PVYSDGSSKA 120 VIGLKKTLVY YIGSAGKGSK TDWMMHEFRL PTANDTIPGD STHVNPTPPS LLHAEVWTLC 180 RIFKRNVSSR KYTPDWREVA NGKRVKPQQS KYQEAYISFG DNESTISTNN INVTESNGNY 240 ERNLFQLHQT PHQHQPILMD TASTTQVDNT GPHFSNDDIH NITYENWDEL RSVVEFAFGP 300 SSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-43	10	191	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-43	10	191	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-43	10	191	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-43	10	191	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-43	10	191	8	174	NAC domain-containing protein 19
3swm_B	4e-43	10	191	8	174	NAC domain-containing protein 19
3swm_C	4e-43	10	191	8	174	NAC domain-containing protein 19
3swm_D	4e-43	10	191	8	174	NAC domain-containing protein 19
3swp_A	4e-43	10	191	8	174	NAC domain-containing protein 19
3swp_B	4e-43	10	191	8	174	NAC domain-containing protein 19
3swp_C	4e-43	10	191	8	174	NAC domain-containing protein 19
3swp_D	4e-43	10	191	8	174	NAC domain-containing protein 19
4dul_A	5e-43	10	191	5	171	NAC domain-containing protein 19
4dul_B	5e-43	10	191	5	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002686	2e-41	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489945.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-70	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A398A4B8	0.0	A0A398A4B8_BRACM; Uncharacterized protein
STRING	Bo3g065200.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-166	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]