PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC220_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 204aa    MW: 22799.4 Da    PI: 6.1635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC220_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-1857105355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  RrC220_p1  57 FRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHDVAALAIKG 105
                8****998.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-4056119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3256114IPR001471AP2/ERF domain
PROSITE profilePS5103222.89356113IPR001471AP2/ERF domain
PRINTSPR003672.4E-105768IPR001471AP2/ERF domain
PfamPF008471.3E-1157105IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2157114IPR016177DNA-binding domain
CDDcd000182.19E-3457115No hitNo description
PRINTSPR003672.4E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDHSSSLESH LDDCRRRSQA KAMGRVVNNN DDNIKKKKRV KEDFDDEKIH VSKNQSFRGV  60
RMRQWGKWVS EIREPKKKSR IWLGTFPTAE MAARAHDVAA LAIKGDSAHL NFPELAYHLP  120
RPVSTDPKDI QAAAASAAAS AFIDMEVETS SPSTGSTELS SPAMASIADD AFSDLPDLLL  180
DVNHKNDGFW ESFPYEEPFF SGNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1652113163ATERF1
3gcc_A6e-1652113163ATERF1
5wx9_A8e-16521131072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474831.11e-128PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP32e-82ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A3N6R8E61e-120A0A3N6R8E6_BRACR; Uncharacterized protein
STRINGBo3g028500.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.19e-74ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]