PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 337aa    MW: 38598.6 Da    PI: 8.5478
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.8e-1053100154
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
               s+ykG+   +++g W A+I+       +kr++lg+f +  eAa a++ a  kl+
  RrC21_p4  53 SKYKGIV-EHRNGHWGAQIYID-----HKRIWLGTFKSSVEAAMAYDSASVKLR 100
               79****7.6679******9993.....4********************988887 PP
2B389.72.2e-28169264184
               EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE...E CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk...l 84 
               f k ltpsdv+k++rlv+pkk+a ++         g++ e  ++++++d+  r+W+++++y+ +s+++v+t+GWk+Fvk+++Lke+D+vvF+   l
  RrC21_p4 169 FRKGLTPSDVGKLNRLVIPKKHAVKYlplieereeGEIVEDVVEVVFYDRAMRQWKFRYCYWTSSQSFVFTSGWKRFVKEKNLKERDVVVFYkceL 264
               7899**************************9999855666889************************************************93333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-55399IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1353112IPR016177DNA-binding domain
CDDcd000181.92E-2053111No hitNo description
PROSITE profilePS5103216.50254111IPR001471AP2/ERF domain
SMARTSM003801.2E-1454117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1454112IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-32161265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-26167262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-22168267No hitNo description
SMARTSM010192.1E-19169270IPR003340B3 DNA binding domain
PfamPF023621.8E-25169266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365169278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGMYNQMTET SSSSNSLLPL KKRKRPSFDD TTTTTDNALV VAATKKVALS GSSKYKGIVE  60
HRNGHWGAQI YIDHKRIWLG TFKSSVEAAM AYDSASVKLR SFDADSHRNF PLNAFTVYEP  120
NFQKGYTTEQ FRDFLSLPFH NVASGINLVG SKQVRGGGDQ DSNTWTELFR KGLTPSDVGK  180
LNRLVIPKKH AVKYLPLIEE REEGEIVEDV VEVVFYDRAM RQWKFRYCYW TSSQSFVFTS  240
GWKRFVKEKN LKERDVVVFY KCELEGQSKN FLMIDLHYYS GDDSMVIDEE VNESHVHYTS  300
KGEVKTENDN SSKLKEEEIK SVENKAAGFM LFGVKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2616828313121DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925LKKRKRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465445.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-128RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3P5ZAT11e-174A0A3P5ZAT1_BRACM; Uncharacterized protein
TrEMBLM4ENV61e-174M4ENV6_BRARP; Uncharacterized protein
STRINGBra030476.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-117RAV family protein