PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2196_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YB

Protein Properties

Length: 179aa MW: 19410.8 Da PI: 9.7154

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2196_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.3	7.2e-56	31	125	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimk+ lPan+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre ++ RrC2196_p2 31 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLTRYREGDT 125 69*****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-53	27	149	IPR009072	Histone-fold
SuperFamily	SSF47113	1.86E-39	34	135	IPR009072	Histone-fold
Pfam	PF00808	2.2E-27	37	101	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-20	65	83	No hit	No description
PROSITE pattern	PS00685	0	68	84	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.3E-20	84	102	No hit	No description
PRINTS	PR00615	1.3E-20	103	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MAESQQQAKS PGGGGGGESG GDQSPRSSSH VREQDRFLPI ANISRIMKRG LPANGKIAKD 60 AKEIVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MATLGFEDYI DPLKVYLTRY 120 REGDTKGSAK GGDANAKKDV QSSQNGQSDK SRSLFLPSGS SRSLLTKALS HKLLTETLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-47	31	122	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-47	31	122	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353083	1e-115	AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133115.1	4e-94	PREDICTED: nuclear transcription factor Y subunit B-8
Refseq	XP_013738285.1	4e-94	nuclear transcription factor Y subunit B-8
Swissprot	Q8VYK4	4e-90	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0D3B5C3	2e-93	A0A0D3B5C3_BRAOL; Uncharacterized protein
STRING	Bo3g031490.1	4e-94	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-81	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]