PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2185_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 794aa    MW: 88167.7 Da    PI: 5.8328
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2185_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1965121157
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  RrC2185_p4  65 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 121
                 688999************************************************995 PP
2START211.82.4e-662514642206
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT... CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg... 88 
                 la +a++el+++++ +ep W  ++  ++++e++++f+++ +     +++ea+r+s+vv+m++ + ve+l+d++ qW+  +a    +a+tl+v+s+g   
  RrC2185_p4 251 LAVSAMEELMRMVQMDEPSWINLV--LDEEEYTRTFPRGIGpkpagFRSEASRESVVVIMNHINIVEILMDVN-QWSMVFAgmvsRAMTLAVLSTGvag 346
                 67899*******************..************999********************************.************************* PP

                 ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
       START  89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                    galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvtwvehv++++r +h l+++
  RrC2185_p4 347 hynGALQVMTAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSIQPNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVDDRGVHDLYKH 441
                 *****************************************************8....***************************************** PP

                 HHHHHHHHHHHHHHHHTXXXXXX CS
       START 184 lvksglaegaktwvatlqrqcek 206
                 +v++g a+gak+wva l+rqce+
  RrC2185_p4 442 MVSTGDAFGAKRWVAILDRQCER 464
                 *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2145120IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1957127IPR009057Homeodomain-like
PROSITE profilePS5007116.47162122IPR001356Homeobox domain
SMARTSM003891.6E-1863126IPR001356Homeobox domain
PfamPF000463.6E-1765120IPR001356Homeobox domain
CDDcd000861.12E-1865123No hitNo description
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PROSITE profilePS5084841.217241467IPR002913START domain
SuperFamilySSF559617.56E-33244466No hitNo description
CDDcd088752.07E-120245463No hitNo description
SMARTSM002342.6E-58250464IPR002913START domain
PfamPF018528.6E-59251464IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-5340429IPR023393START-like domain
SuperFamilySSF559615.01E-25483709No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MFEPNMLLAA MNNEDSNNYN HEINNNNNEG FLRDDEFDSA NTKSGSENQE GGLGNDQDPH  60
HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE LGLEPLQVKF WFQNKRTQMK  120
NHHERHANSH LRAENEKLRG DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL  180
REEIDRISTI AAKYVGKPVS SYPLMSPPLP PRPLELAMGN FGGDVYGNNS TDQFKSITAP  240
KESDKPVIID LAVSAMEELM RMVQMDEPSW INLVLDEEEY TRTFPRGIGP KPAGFRSEAS  300
RESVVVIMNH INIVEILMDV NQWSMVFAGM VSRAMTLAVL STGVAGHYNG ALQVMTAEFQ  360
VPTPLVPTRE TYFARYCKQQ ADGSWAVVDI SLDSIQPNPP VRCRRRASGC LIQEMPNGYS  420
KVTWVEHVEV DDRGVHDLYK HMVSTGDAFG AKRWVAILDR QCERLASVMA TNISSGEVGV  480
ITNQEGRRSM LKLAERMVIS FCAGVSASTA HTWTTLSGTG AEDVRVMTRK SVDDPGRPPG  540
IVLSAATSFG IPVPPKRVFD FLRDENSRNE WDILSNGGVV QEMAHIANGR DTGNCVSLLR  600
VNSANSSQSN MLILQESCTD PTASFVIYAP VDIVAMNIVL NGGDPDYVAL LPSGFAILPD  660
GSANGGGEGG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVDRIKS SIPVPRRESP  720
WGLPEGHREP KAHRCNDRVE DVVQAFFEGN PFKTVPGPFK LFYRCMRSKP GEEPTEPFTY  780
LDLEPPKREV KLEE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487097.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
RefseqXP_018487098.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
RefseqXP_018487099.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3DYX80.0A0A0D3DYX8_BRAOL; Uncharacterized protein
STRINGBo8g115250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2