PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2178_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Nin-like | ||||||||
Protein Properties | Length: 232aa MW: 27194.9 Da PI: 7.4305 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.1 | 1.1e-25 | 121 | 171 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl RrC2178_p1 121 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIYRWPHRKLKSL 171 6799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.075 | 107 | 193 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-21 | 124 | 171 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDPNSLQPLD SMKIENQYEP DSLFDVLEKL PPLDSLLDTE YLKPDSGLRF EYQYNSFEDF 60 FENIEVNNTI SSDILMLTQE PYFSSDSPSP LAIQNNHCPG TNERGEKKTP KNRNTRIKRR 120 QDKLELSEIR KYFDRPIMKA AKELNVGLTV LKKRCRELEI YRWPHRKLKS LNSLIYNLKG 180 VGMDEEVKNL EEHRVLIEQE PDAELTDGTK KLRQACFKAK YKRKKSLAND GY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455880.1 | 1e-168 | PREDICTED: protein RKD4 | ||||
Swissprot | Q9LVU8 | 1e-112 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A078IEW6 | 1e-155 | A0A078IEW6_BRANA; BnaA10g06400D protein | ||||
TrEMBL | A0A397XRA8 | 1e-155 | A0A397XRA8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CFV6 | 1e-155 | M4CFV6_BRARP; Uncharacterized protein | ||||
STRING | Bra003088.1-P | 1e-156 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-115 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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