PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC21787_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 205aa MW: 23263.8 Da PI: 10.5334 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.4 | 6.4e-31 | 74 | 137 | 2 | 65 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl++ak++i+el+ + RrC21787_p1 74 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNAAKEEIDELPPL 137 689**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-29 | 76 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.748 | 76 | 134 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MDLHFLGRSG EESIMNTGPW KDTNDDVSGQ TRTRHEEAVV AVATAKRPAS ISSSSSSSWM 60 KSKDPRIVRV SRAFGGKDRH SKVCTLRGLR DRRVRLSVPT AIQLYDLQER LGLDQPSKAV 120 DWLLNAAKEE IDELPPLPKS LVAVKKTTMR GVKRMSLSET IITLGLTESM TTWNIIMNSI 180 QVFRKIITIN YIVLYHFHHK SWYVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 81 | 135 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 81 | 135 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232459 | 1e-116 | AC232459.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB020F06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491351.1 | 7e-85 | PREDICTED: transcription factor TCP13-like | ||||
Swissprot | Q9S7W5 | 2e-56 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A0D3B9D0 | 1e-68 | A0A0D3B9D0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A398A2Q5 | 1e-68 | A0A398A2Q5_BRACM; Uncharacterized protein | ||||
STRING | Bo3g055460.1 | 2e-69 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-58 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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