PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21725_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 82aa    MW: 9393.27 Da    PI: 9.5276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21725_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68e-101559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+  d+++  a + + ++   +W  +ar +g g++++++k ++ 
      RrC21725_p1 15 SWTAKQDKQFEVALATYDKDtpdRWQNVARAVG-GKSAEEVKRHYE 59
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.6741166IPR017884SANT domain
SMARTSM007171.1E-81264IPR001005SANT/Myb domain
SuperFamilySSF466896.55E-131470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-51568IPR009057Homeodomain-like
PfamPF002499.7E-81559IPR001005SANT/Myb domain
CDDcd001675.66E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSISTSR SSNSSWTAKQ DKQFEVALAT YDKDTPDRWQ NVARAVGGKS AEEVKRHYEL  60
LIRDVNDIES GRYPQPRYRN TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-29682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102249.13e-55PREDICTED: protein RADIALIS-like 4
RefseqXP_013596257.13e-55PREDICTED: protein RADIALIS-like 4
RefseqXP_013651432.13e-55protein RADIALIS-like 4
RefseqXP_013651433.13e-55protein RADIALIS-like 4
RefseqXP_013729038.13e-55protein RADIALIS-like 4
RefseqXP_018436934.13e-55PREDICTED: protein RADIALIS-like 4
RefseqXP_018436937.13e-55PREDICTED: protein RADIALIS-like 4
SwissprotQ1G3C43e-38RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLA0A078GKQ46e-54A0A078GKQ4_BRANA; BnaC07g03440D protein
TrEMBLA0A0D3D3276e-54A0A0D3D327_BRAOL; Uncharacterized protein
TrEMBLA0A397YHA36e-54A0A397YHA3_BRACM; Uncharacterized protein
TrEMBLA0A3P6ES546e-54A0A3P6ES54_BRAOL; Uncharacterized protein
TrEMBLM4FEU56e-54M4FEU5_BRARP; Uncharacterized protein
STRINGBra039617.1-P1e-54(Brassica rapa)
STRINGBo7g011290.11e-54(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.18e-40RAD-like 4