PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21319_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 405aa    MW: 44665.4 Da    PI: 8.6594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21319_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.47e-34153209259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgs+fprsYY+Ct + Cpvkkkvers  d++v+ei+Y+g+Hnhe
  RrC21319_p1 153 DDGYNWRKYGQKQVKGSDFPRSYYKCTNPACPVKKKVERSV-DGQVTEIIYKGQHNHE 209
                  8****************************************.***************8 PP
2WRKY105.92.1e-33308366159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC v+k+ver+a+dpk+v++tYeg+Hnh+
  RrC21319_p1 308 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTAGCGVRKHVERAANDPKAVVTTYEGKHNHD 366
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-29146211IPR003657WRKY domain
PROSITE profilePS5081124.065147211IPR003657WRKY domain
SuperFamilySSF1182909.02E-26149211IPR003657WRKY domain
SMARTSM007741.1E-36152210IPR003657WRKY domain
PfamPF031061.1E-25153209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36293368IPR003657WRKY domain
SuperFamilySSF1182908.63E-30300368IPR003657WRKY domain
PROSITE profilePS5081138.388303368IPR003657WRKY domain
SMARTSM007741.9E-38308367IPR003657WRKY domain
PfamPF031063.0E-26309366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
AAAAVGAGAH QTPVSSVGGG GDSLLDPRFK QNRPTGLMVT QPPAMFTVAP GLSPATLLDS  60
PSFFGLFSPI QGSFGMTHQQ ALAQVTAQAV QGNNVQIQSE SITQQQQQQT SLTVVPSLPA  120
PVQDSPPRGQ RDDSEVSVYE HRPQLQHADK PADDGYNWRK YGQKQVKGSD FPRSYYKCTN  180
PACPVKKKVE RSVDGQVTEI IYKGQHNHEP PQNNKRGRDN NLNCNSLNKS KRDQETSQVT  240
TTEQMSEASD SEEVGNVETS LGGTQEEDEP DPKRRNTEVR VSEPVSSLNR TVTEPRIIVQ  300
TRSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTAGCG VRKHVERAAN DPKAVVTTYE  360
GKHNHDVPAG RTSSHQLRPN NNPSTVNLNQ QQTVARLRLK EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-43153369878Probable WRKY transcription factor 4
2lex_A6e-43153369878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300270.0KF430027.1 Brassica rapa WRKY transcription factor 3 (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441452.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLM4ECP40.0M4ECP4_BRARP; Uncharacterized protein
TrEMBLV5RGZ40.0V5RGZ4_BRACM; WRKY transcription factor 3
STRINGBra026554.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]