PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC21148_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 153aa MW: 17356 Da PI: 10.1252

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC21148_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.5	1.4e-41	5	135	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+GfrF Pt+ el+++yL+ ++ g + ++ + i+ +d+++veP +Lp+ ++++++++w fF++r++++a+g r++r+t+sgyWkatg+ +v+s RrC21148_p1 5 LPVGFRFYPTEVELISFYLRIQLGGGHATIYSLIPIIDVFNVEPTQLPNlageRCRGDKEQWLFFVPRQEREARGGRPSRTTNSGYWKATGSPGPVFS 102 79**************************999**********9656766667888********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 +++++g+kkt+vfy g+apkg+kt+W m+ey+ RrC21148_p1 103 PDNRVIGVKKTMVFYIGKAPKGRKTKWKMNEYK 135 ******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-43	3	141	IPR003441	NAC domain
PROSITE profile	PS51005	43.236	5	153	IPR003441	NAC domain
Pfam	PF02365	1.7E-20	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MVEELPVGFR FYPTEVELIS FYLRIQLGGG HATIYSLIPI IDVFNVEPTQ LPNLAGERCR 60 GDKEQWLFFV PRQEREARGG RPSRTTNSGY WKATGSPGPV FSPDNRVIGV KKTMVFYIGK 120 APKGRKTKWK MNEYKAIDET ASVSTIPKVH NHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	5	138	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	5	138	20	147	NAC domain-containing protein 19
3swm_B	1e-32	5	138	20	147	NAC domain-containing protein 19
3swm_C	1e-32	5	138	20	147	NAC domain-containing protein 19
3swm_D	1e-32	5	138	20	147	NAC domain-containing protein 19
3swp_A	1e-32	5	138	20	147	NAC domain-containing protein 19
3swp_B	1e-32	5	138	20	147	NAC domain-containing protein 19
3swp_C	1e-32	5	138	20	147	NAC domain-containing protein 19
3swp_D	1e-32	5	138	20	147	NAC domain-containing protein 19
4dul_A	1e-32	5	138	17	144	NAC domain-containing protein 19
4dul_B	1e-32	5	138	17	144	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018491634.1	1e-106	PREDICTED: putative NAC domain-containing protein 61
Swissprot	Q9M290	9e-95	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	A0A0D3BGX4	1e-103	A0A0D3BGX4_BRAOL; Uncharacterized protein
STRING	Bo3g123480.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.1	4e-97	NAC domain containing protein 61