PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2092_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 770aa    MW: 86303.7 Da    PI: 8.1319
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2092_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822147.21.4e-45642041136
      DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas...aspesslq. 95 
                 ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++  s+ ++ a +agss s    +++s+   
  RrC2092_p1  64 GGSRRSRPVEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSKSQGTKPAVVAGSSGShmaPQQSSPPAl 162
                 689*******************************************************************55555544455554443322555555556 PP

      DUF822  96 sslkssalaspvesy.saspksssfpspssldsislasaasl 136
                  +++ss l+sp+++  ++++k +  p ps +d  +++ ++ +
  RrC2092_p1 163 RVVSSSGLRSPTTELnACRMKGVFAPTPSPYDLPPTQCSELV 204
                 7788899***987651678999*********99888755444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.8E-3965195IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.21E-165238667IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.0E-182241707IPR013781Glycoside hydrolase, catalytic domain
PfamPF013739.6E-92247662IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62278292IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62299317IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62321342IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060325333IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007501.0E-62414436IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62487506IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62522538IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62539550IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62557580IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-62597619IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MVTDMQKLLG ASEEDDEEEM DADVKEEDDG HRRQNRGAAS GSSNDEFMFQ QSSSMQDQQV  60
DTPGGSRRSR PVEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVISALARE  120
AGWVVLPDGT TFPSKSQGTK PAVVAGSSGS HMAPQQSSPP ALRVVSSSGL RSPTTELNAC  180
RMKGVFAPTP SPYDLPPTQC SELVGSVNKT DGLVGCSVDV INNKQILEIP PNMTEQDFSG  240
TPYVPVYVML PLGVINMKCE LADRDGLLKH LRILKSIQVD GVKVDCWWGI AECHSPQEYN  300
WNGYRQLFQI VRDLNLKIQV LMCFHECGGN VGDDVCIPLP HWVAEIGRTN PDIYFTDREG  360
RRNPECLSWG IDKERVLRGR TALEVYFDYM RSFRIELGEF VEEGVITVVE IGLGPCGELR  420
YPSCPIKHGW RYPGVGEFQC YDKYLLKSLR RAAESRGHPF WGRAPENAGS YNSQPQGTGF  480
FCDGGDYDGL YGRFFLKWYS QVLIDHADRV LSLAKLVFFD STCIAAKVPD VHWWYRTASH  540
AAELTAGFYN PSNRDGYAEI ASTLKKHGAT LSFVSGEVQV LNRPDDFSGA LGEPEAVAWQ  600
VLNAAWDTDT PIARENSLPC HDRVGYNKVL ESVKFPNDPD RRHLSSFAYS RLVPALLEGH  660
NLVEFDRVYR EGALSWFELR NRVALESSGE RMSKKNNLAK RKKQHEYNLQ KEKEIQDKKI  720
KKLQANKNKM KVDGSGKKKK GGFSVGKKKL KTKLTPAAKA KAAQAMELDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13624366711436Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436598.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_018436599.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_018436600.10.0PREDICTED: beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D3BQ770.0A0A0D3BQ77_BRAOL; Beta-amylase
TrEMBLA0A3P6C9D30.0A0A3P6C9D3_BRAOL; Beta-amylase
STRINGBo4g025050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]