PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2084_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 36338.1 Da PI: 4.9093 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 130 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ +l+g RrC2084_p1 130 KFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 179 89*******.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 129 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 130 | 187 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-38 | 130 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-33 | 130 | 186 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-21 | 130 | 188 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-12 | 130 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDEYMDLRPL KYTEHKTSVT KYTNTSPGKN ISGKTRPDSV RTVRVSVTDP YATDSSSDEE 60 EDFLFPRRRV KRFVNEIKVE PGCNNNNVNI PTGGVSMKER KRLSDETQSP AASSRHHRSL 120 KVSAGQNGRK FRGVRQRPWG KWAAEIRDPE QRRRIWLGTF ETAEEAAVVY DNAAIRLRGP 180 DALTNFSVPP QSREEDESEP EQPVIDKPES IITITTTTTS SSESTEEFQH ISSPTSVLNL 240 QPSEEVQQIQ KVFKSAKPEP ESSDAPWWHS RFSTGSRNDD IFGDMFLGGQ SSMDIEDELS 300 IKDIGSMFSD FDDSLISELL VV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 128 | 194 | 3 | 70 | ATERF1 |
3gcc_A | 9e-22 | 128 | 194 | 3 | 70 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468106.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF3-like | ||||
Swissprot | Q9FK12 | 1e-115 | CRF3_ARATH; Ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | A0A398A946 | 1e-180 | A0A398A946_BRACM; Uncharacterized protein | ||||
STRING | Bra022643.1-P | 1e-180 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 1e-115 | cytokinin response factor 3 |
Publications ? help Back to Top | |||
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