PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20718_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 235aa    MW: 25057.4 Da    PI: 7.8783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20718_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-0591113123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ CgksFs+   L  H  +H
  RrC20718_p2  91 YKCTVCGKSFSSYQALGGHKTSH 113
                  9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.51E-1090113No hitNo description
Gene3DG3DSA:3.30.160.606.1E-591113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002891113IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-1391115IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.30291118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576676.51E-10151178No hitNo description
PROSITE profilePS501579.349156178IPR007087Zinc finger, C2H2
SMARTSM003550.82156178IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-11156180IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MALETLNSPT SATASARPLL RYREEMEPES LEQWAKRKRT KRQRFDQNRH SQETAPSEEE  60
YLALCLLMLA RGSAAQSPLP PSQPSSDHRG YKCTVCGKSF SSYQALGGHK TSHRKPASNA  120
NVPGSSQEPS NNSHSNSNGG SVVISGYGVS QSGKIHTCSI CFKSFSSGQA LGGHKRCHYD  180
GGNNGNGNGS SSNSSVEVVG GSDVDDERSS EQSAIGDHRG FDLNLPAEQV AVVIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBRU765540.0U76554.1 Brassica rapa zinc-finger protein-1 (BR42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553039.11e-139zinc finger protein AZF1-like
SwissprotQ9SSW11e-102AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A0D3AYX41e-127A0A0D3AYX4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4I51e-127A0A3P6E4I5_BRAOL; Uncharacterized protein
STRINGBo2g168030.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-80zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]