PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC203_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 242aa MW: 25616.4 Da PI: 8.613 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H RrC203_p1 89 YKCSVCDKAFSSYQALGGHKASH 111 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 149 | 168 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+ksF + L H RrC203_p1 149 HVCTICNKSFATGQALGGHK 168 79********9988776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.37E-10 | 88 | 111 | No hit | No description |
Pfam | PF13912 | 4.7E-13 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 89 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0073 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.658 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.37E-10 | 144 | 171 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 147 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 9.8E-13 | 149 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.081 | 149 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.263 | 149 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 151 | 171 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001047 | Molecular Function | core promoter binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MALEALTSPR LASPVPTLFQ DSAVGFHGSK GKRSKRSRSD FDRSLTEDEY IALCLMLLAQ 60 DGDRTRDLDL PSSSSSPPLL PTPTLTTSYK CSVCDKAFSS YQALGGHKAS HRKNSSQTQS 120 SGGDEKSTSS AVTIASHGRG GGGGSVRPHV CTICNKSFAT GQALGGHKRC HYEGKNGGVA 180 SSSLSVSEGV GSTSHVSSGS HHHQHHHRGF DLNIPPIPEF STVNGEEEVM SPMPTTKKLR 240 LE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00622 | PBM | Transfer from AT5G04340 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ858291 | 0.0 | DQ858291.1 Brassica carinata C2H2 zinc finger protein (ZF2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442236.1 | 1e-135 | PREDICTED: zinc finger protein ZAT6-like | ||||
Swissprot | O22533 | 1e-103 | ZAT6_ARATH; Zinc finger protein ZAT6 | ||||
TrEMBL | A0A0D3EHX5 | 1e-125 | A0A0D3EHX5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g181170.1 | 1e-125 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 2e-81 | zinc finger of Arabidopsis thaliana 6 |