PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20339_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BES1
Protein Properties Length: 278aa    MW: 29513.5 Da    PI: 5.2765
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20339_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822122.36.5e-38211236150
       DUF822  36 qGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislas 132
                  +Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg++++ e+++++g sa+asp ss+q        +s ++sy++sp ss+f+spss+++++l+ 
  RrC20339_p1   2 YGNYELPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCSRPiEHMDIGGGSATASPRSSYQ--------PSTCASYNPSPGSSNFMSPSSSSFANLTF 91 
                  8***************************************99*******************........9********************99998875 PP

       DUF822 133 a...asllpvlsvlslvsssl 150
                      +sl+p+l++ls++sss+
  RrC20339_p1  92 GdghQSLMPWLKHLSTSSSSA 112
                  57789*********9877764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.0E-381106IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MYGNYELPKH CDNNEVLKAL CNEAGWTVEP DGTTYRKGCS RPIEHMDIGG GSATASPRSS  60
YQPSTCASYN PSPGSSNFMS PSSSSFANLT FGDGHQSLMP WLKHLSTSSS SASSSSRLPH  120
YLYIPGGSIS APVTPPFSSP TARTPTMNPF FVSSTPPSPT RQTIPESEWF SRIELAQSVP  180
ASPTFSLVSQ TPFGFKEAVG RGGSRMWTPG PSGTCSPAII TPGADQTSDV PMSEAVTPPE  240
FAFGSNTNGL VKAWEGERIH EESGSDDLEL TLGNSSTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-15340404441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-15340404441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-15340404441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-15340404441Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442758.11e-174PREDICTED: BES1/BZR1 homolog protein 4
SwissprotQ9ZV881e-160BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A178WLH51e-157A0A178WLH5_ARATH; BEH4
STRINGAT1G78700.11e-158(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-142BES1/BZR1 homolog 4