PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC20249_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YC

Protein Properties

Length: 66aa MW: 7458.81 Da PI: 9.8586

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC20249_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46.7	7e-15	6	62	18	74
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74 ++++P arikki++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ RrC20249_p1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTV 62 5789******************************************99999888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-24	3	64	IPR009072	Histone-fold
SuperFamily	SSF47113	6.38E-15	4	64	IPR009072	Histone-fold
Pfam	PF00808	2.3E-18	8	66	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK 60 TVSSLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-21	2	66	5	69	Transcription Regulator NC2 alpha chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353067	1e-75	AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006471321.1	1e-39	dr1-associated corepressor-like isoform X3
Refseq	XP_015383655.1	1e-39	dr1-associated corepressor-like isoform X3
Refseq	XP_024952618.1	8e-40	dr1-associated corepressor-like isoform X9
Swissprot	Q14919	2e-19	NC2A_HUMAN; Dr1-associated corepressor
TrEMBL	A0A078EI38	4e-38	A0A078EI38_BRANA; Transcription factor subunit NF-YC11B
TrEMBL	A0A078IKW1	4e-38	A0A078IKW1_BRANA; BnaA01g30580D protein
TrEMBL	A0A0B2PUJ1	2e-38	A0A0B2PUJ1_GLYSO; Dr1-associated corepressor
TrEMBL	A0A0D3BAY0	4e-38	A0A0D3BAY0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P5ZCG8	4e-38	A0A3P5ZCG8_BRACM; Uncharacterized protein
STRING	AT3G12480.1	7e-39	(Arabidopsis thaliana)
STRING	Bo3g064920.1	6e-39	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3506	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-43	nuclear factor Y, subunit C11