PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC20161_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 274aa MW: 29326.7 Da PI: 8.262

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC20161_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.9	4.7e-40	52	153	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+l+ RrC20161_p1 52 PCGACKFLRRKCASGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSLV 149 7*********************9989******************************************************************** PP DUF260 98 keel 101 +++l RrC20161_p1 150 QSQL 153 9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.376	51	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-39	52	150	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MADQQRNHNT SDSRRKSAAG KRTSQRTTTS LFSSGGGAMA ATATTGTGTA SPCGACKFLR 60 RKCASGCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLHH IPVNRRHDAV VTISYEAQAR 120 LSDPVYGCVS TILALQQQVA SLQAELSLVQ SQLINSRVAM ANVMQQQQQQ QSHHQQQQLV 180 VMQQTEYSNN SSASTTLAGA TMNSFTATAA AAVSYDVMVP ANLEHSLQPM PRHQQVTINH 240 HEDEEESGTD FSVAVGSTTV AAEIIFPAEG FHRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-40	43	154	2	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-40	43	154	2	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745038.1	1e-154	LOB domain-containing protein 20
Swissprot	Q9SRV3	1e-146	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A3P6AZN0	1e-153	A0A3P6AZN0_BRAOL; Uncharacterized protein
STRING	Bra036436.1-P	1e-149	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-130	LOB domain-containing protein 20