PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC20008_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 154aa MW: 18330.9 Da PI: 9.1768 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv + + +G g W+t +++ g++R++k+c++rw +yl RrC20008_p1 15 KGAWTPEEDQKLVSYLNNHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.058 | 10 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.51E-21 | 16 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.15E-8 | 17 | 62 | No hit | No description |
SMART | SM00717 | 0.11 | 67 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 7.483 | 67 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-13 | 70 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVRTPCCKAE LGLKKGAWTP EEDQKLVSYL NNHGEGGWRT LPEKAGLKRC GKSCRLRWAN 60 YLRPDIKRGE FTEDEECSII SLHALHGNKF MGCYSSTDNE IKNYWNTHIK KRLIKKGVDP 120 VRKENQSECS LGDYRKWWPT HYYYYCYYYY KCHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-19 | 13 | 113 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117331 | 1e-110 | AK117331.1 Arabidopsis thaliana At1g18570 mRNA for unknown protein, complete cds, clone: RAFL16-90-B03. | |||
GenBank | AY519555 | 1e-110 | AY519555.1 Arabidopsis thaliana MYB transcription factor (At1g18570) mRNA, complete cds. | |||
GenBank | BT006244 | 1e-110 | BT006244.1 Arabidopsis thaliana At1g18570 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480558.1 | 1e-77 | PREDICTED: transcription factor MYB51 | ||||
Swissprot | O49782 | 2e-74 | MYB51_ARATH; Transcription factor MYB51 | ||||
TrEMBL | A0A078G172 | 1e-74 | A0A078G172_BRANA; BnaC05g14250D protein | ||||
STRING | Bo5g025570.1 | 3e-75 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18570.1 | 3e-76 | myb domain protein 51 |