PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 161aa    MW: 17209.6 Da    PI: 7.6856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-171564355
      AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
             ykGVr++k++ +Wv+eIr p+    +  r++lg+f t+e+Aa a++ a+++l+g
  RrC1_p3 15 YKGVRQRKNSDKWVSEIRAPR----KpNRIWLGTFTTPEMAAIAYDVAALALKG 64
             9******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7451472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-261474IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-191474IPR016177DNA-binding domain
SMARTSM003803.3E-271478IPR001471AP2/ERF domain
CDDcd000181.23E-261574No hitNo description
PfamPF008471.0E-101564IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSGTSKENSG RHHMYKGVRQ RKNSDKWVSE IRAPRKPNRI WLGTFTTPEM AAIAYDVAAL  60
ALKGTQSGLN FPNSASALPA PASMSPGDIQ AAAASAAAAF GAARDASVQR SNVMMNGSYE  120
NTNGFIDEDL IFDMPNVLMD MAEGMLLILQ MDNVLTGVGL K
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069191e-101AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608671e-101AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026851e-101CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466041e-101DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530451e-101DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438178.12e-90PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR03e-65ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D3BRI73e-81A0A0D3BRI7_BRAOL; Uncharacterized protein
STRINGBo4g034600.16e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-45ERF family protein