PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC198_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 368aa    MW: 40152.8 Da    PI: 8.7141
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC198_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.62.3e-38451812135
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaa.ksk 98 
                 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++  +++++++ ++ +  s+  +aa+++a +s+
  RrC198_p8  45 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGLDQPSKAVEWLIKAAEDSISELPSL-NNTNFPMTDDDDQIQTVTGASPapAAAAKSAcSSN 143
                689*************************************************************.44444443444444433333334566666665888 PP

        TCP  99 ksqksaasalnlak.esrakarararertrekmriknk 135
                +++++++s l+l++ e r kar+rarert+++ + +++
  RrC198_p8 144 SDTSKNSSGLSLSRsELRDKARERARERTAKETKERDH 181
                999999999****99***************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3546178IPR005333Transcription factor, TCP
PROSITE profilePS5136930.94247105IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205158179IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MFPIIGDLMK TNNGDVVDNN NNNNNNRLSR WHHNSSRIIR VSRASGGKDR HSKVWTSKGP  60
RDRRVRLSVS TALQFYDLQD RLGLDQPSKA VEWLIKAAED SISELPSLNN TNFPMTDDDD  120
QIQTVTGASP APAAAAKSAC SSNSDTSKNS SGLSLSRSEL RDKARERARE RTAKETKERD  180
HHTTTTASFT DLLNSGSVPV NINRQWMAPS SSPAQMEYLS SGLILGSGQT HFPVQTNAHP  240
YSDHHHHPHQ EFSFVPDHLI SPAGSNGGGA FNLDFNMSTT SGAGTAVASS AGFSGFNRGT  300
LQSNSANHHH QQSLLANLQR FSSSEGGGGP QFLFGALPAE NHHHNNHQFQ LYYENGCRNS  360
DQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2352106155Putative transcription factor PCF6
5zkt_B9e-2352106155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527970.0AK352797.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-O21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456703.10.0PREDICTED: transcription factor TCP2-like
SwissprotQ93V430.0TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A078J9T50.0A0A078J9T5_BRANA; BnaC01g40850D protein
TrEMBLA0A0D3A4310.0A0A0D3A431_BRAOL; Uncharacterized protein
STRINGBo1g019520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-138TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]