PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC198_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 302aa    MW: 34100.2 Da    PI: 4.8666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC198_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18112162255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ k++g
  RrC198_p1 112 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVKIRG 162
                8********.**********44465..***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-29111171IPR001471AP2/ERF domain
PfamPF008475.2E-12112162IPR001471AP2/ERF domain
CDDcd000181.75E-28112171No hitNo description
SuperFamilySSF541711.31E-20112172IPR016177DNA-binding domain
SMARTSM003809.8E-36112177IPR001471AP2/ERF domain
PROSITE profilePS5103222.721112171IPR001471AP2/ERF domain
PRINTSPR003676.9E-11113124IPR001471AP2/ERF domain
PRINTSPR003676.9E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAFGNIVQEP DREILKNVWE NFIRKPDQTD TKAVHVQEVS TTWEALPTLD DIPKDSKPSL  60
PSLDYMSMEA KEWAEILDSI ASFPSETNNH LLLTNPAGSR SLPYPVSCKA RKYRGVRRRP  120
WGKFAAEIRD STRNGVRVWL GTFQTAEEAA MAYDKAAVKI RGVQRAHTNF QLETVIKAME  180
MDCGSSYYPI NRSRSTSNHR ETGGKDAIGA YGDRVVDGMV DNGCAFSYCS TQESLGLVGN  240
EEAWLGSRKR QRRDEDCIML QEVEIDDDKK MGSRGEEKCD VFGLFEFEEF GSDYLDTLLS  300
SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23108174166ATERF1
3gcc_A2e-23108174166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469734.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
SwissprotO495151e-131ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A398AK231e-175A0A398AK23_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZE991e-171A0A3P5ZE99_BRACM; Uncharacterized protein
STRINGBra013310.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-123ERF family protein