PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC19886_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 157aa MW: 18405.2 Da PI: 5.8744

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC19886_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.2	1.3e-14	2	50	52	100
DUF260 52 eeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 e+r +a+ +++yeA+ar++dP+yG+v++i++lq+q+ +l+++l+ lk++ RrC19886_p1 2 EDRCEAAITIYYEAQARLQDPIYGCVSHIFSLQRQVVNLQSQLEILKQQ 50 67999****************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.079	1	51	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-12	2	48	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEDRCEAAIT IYYEAQARLQ DPIYGCVSHI FSLQRQVVNL QSQLEILKQQ ATQSMMASDT 60 PSIEDPSYYR DTKLQQLQQS LDLHRHHNNH HQDRSSETEF NSDLKDIVTS YSELDQHLNT 120 FNQHHNHARI FCQRVSGTSR IRDDFGEDVI EHILHIN

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481545.1	2e-81	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 17-like
Swissprot	Q9SLB6	8e-44	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A078IAR0	7e-66	A0A078IAR0_BRANA; BnaA04g24480D protein
STRING	Bra016876.1-P	8e-66	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	3e-46	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]