PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19876_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 301aa    MW: 33119 Da    PI: 9.8308
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19876_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1214.3e-381777262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++ +lkcprCds+ntkfCyynnyslsqPryfCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  RrC19876_p1 17 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 77
                 56789*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.4E-332075IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7232175IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-262175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQSKNMIVAP SHQQQPPQPQ LKCPRCDSSN TKFCYYNNYS LSQPRYFCKA CKRYWTRGGT  60
LRNVPVGGSY RKNKRVKRKA TATSTAASTA SKTTSSSPNN RHHQISHFSS MNHHPMFYGL  120
SDHVSSCNSL PMIPSRFSDS SKTSSSGLES KFFSSGFSGL SSLGLGLPHH MSHDHTINGG  180
FINNSTENKP FLLSGLFGSS VSLSSSSLLQ HPHKPVNNGC EMMGQSHLQT LASLQDFHVR  240
ENNEDVNKEG KLDQISGNIN GFMSPSSLDP SNYNNIWNNA SVVNGDGLIR QIITLDHPLP  300
P
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934820.0AB493482.1 Arabidopsis thaliana At1g28310 mRNA for hypothetical protein, partial cds, clone: RAAt1g28310.
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022562220.11e-160dof zinc finger protein DOF1.4-like isoform X2
RefseqXP_022562221.11e-160dof zinc finger protein DOF1.4-like isoform X2
SwissprotQ9FZA41e-133DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD91e-159A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6961e-159A0A0D3D696_BRAOL; Uncharacterized protein
STRINGBo7g048220.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-109Dof family protein