PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC19725_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 140aa MW: 15142.5 Da PI: 10.4773 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 25 | 47 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F++ L H +H RrC19725_p1 25 FACKTCNKEFPSFQALGGHRASH 47 78**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H RrC19725_p1 69 HECPICGAEFAIGQALGGHMRKH 91 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.9E-5 | 21 | 50 | No hit | No description |
Pfam | PF13912 | 5.8E-13 | 24 | 49 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 25 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 25 | 47 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 27 | 47 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.1E-5 | 68 | 93 | No hit | No description |
Pfam | PF13912 | 3.1E-10 | 69 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 69 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MINKMASCLV YLSKYHHHDT KSRVFACKTC NKEFPSFQAL GGHRASHRRS AALEGHAPPS 60 PKRVKPVKHE CPICGAEFAI GQALGGHMRK HRGGGGSRSL APTPVTMKKS GGGNGKRVLC 120 LDLNLTPGEN DYLTLELGRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007184 | 1e-89 | AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence. | |||
GenBank | BT029330 | 1e-89 | BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-89 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481891.1 | 1e-100 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 2e-35 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A0D3C2P0 | 3e-92 | A0A0D3C2P0_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g166690.1 | 5e-93 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-74 | C2H2 family protein |