PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1961_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HB-other | ||||||||
Protein Properties | Length: 160aa MW: 18545.9 Da PI: 10.1517 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.4 | 4.5e-17 | 15 | 68 | 3 | 52 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52 k ++t+eq+e+Le+l++ +++ps +r++L ++ +++ +q+kvWFqNrR RrC1961_p5 15 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIREYpilsNIEPKQIKVWFQNRR 68 5679************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.815 | 10 | 68 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-11 | 12 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.92E-14 | 14 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-14 | 15 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.57E-12 | 15 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-16 | 17 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGGGSNSSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIREYP ILSNIEPKQI 60 KVWFQNRRSF SLLLIKKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSYF 120 RQHPQNQGNL ATTDTSCESV VTSGQHHLTP QHQPRDASPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441292 | 6e-89 | AJ441292.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8 (hb-8 gene). | |||
GenBank | AL161582 | 6e-89 | AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78. | |||
GenBank | AY099631 | 6e-89 | AY099631.1 Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds. | |||
GenBank | BT008798 | 6e-89 | BT008798.1 Arabidopsis thaliana At4g32880 gene, complete cds. | |||
GenBank | CP002687 | 6e-89 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z50851 | 6e-89 | Z50851.1 A.thaliana athb-8 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125299.1 | 1e-100 | PREDICTED: homeobox-leucine zipper protein ATHB-8 | ||||
Refseq | XP_009125305.1 | 1e-100 | PREDICTED: homeobox-leucine zipper protein ATHB-8 | ||||
Refseq | XP_013660015.1 | 1e-100 | homeobox-leucine zipper protein ATHB-8 | ||||
Refseq | XP_013660082.1 | 1e-100 | homeobox-leucine zipper protein ATHB-8 | ||||
Refseq | XP_018471819.1 | 1e-100 | PREDICTED: homeobox-leucine zipper protein ATHB-8 | ||||
Swissprot | Q39123 | 1e-100 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A0D3A2G0 | 1e-100 | A0A0D3A2G0_BRAOL; Uncharacterized protein | ||||
STRING | Bra011392.1-P | 1e-100 | (Brassica rapa) | ||||
STRING | Bo1g009850.1 | 1e-101 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18074 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 1e-103 | homeobox gene 8 |