PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19592_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 285aa    MW: 31606.3 Da    PI: 7.7103
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19592_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36.1e-1688137355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  RrC19592_p1  88 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 137
                  9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.099149IPR001471AP2/ERF domain
SMARTSM003800.0065455IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-71350IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-71749IPR001471AP2/ERF domain
CDDcd000183.26E-1186145No hitNo description
SuperFamilySSF541713.99E-1886146IPR016177DNA-binding domain
SMARTSM003804.7E-3087151IPR001471AP2/ERF domain
PROSITE profilePS5103219.26987145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1887145IPR001471AP2/ERF domain
PfamPF008472.9E-1088137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MKLICGIIAV GEKARKGRQG GYDKEDKAAR AYDLAALKYW NTAATTNFPI TIYTKELEEM  60
KHMTKQEFIA SLRSDPESSG FSRGASMYRG VTRHHQQGRW QARIGRVAGN KDLYLGTFAT  120
EEEAAEAYDI AAIKFRGINA VTNFEMNHYD VESIMKSALP IGGAAKRLKL SLESEQKPII  180
GHHQLHQFQQ QQQLQSSPND SSGINFALCP SSAAQSQMIP CGIPFEAASL YHHQQQQQQN  240
FFQHFPANAA SDSTTGSDNN SNVQGSMGLM ASNAAEFFLW PNQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741971e-175AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475766.11e-150PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-130AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1J3E7581e-138A0A1J3E758_NOCCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGCagra.1085s0008.1.p1e-138(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-122AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]