PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19533_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 167aa    MW: 19540.2 Da    PI: 9.9383
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19533_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.5e-53161421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  l pGfrFhPtdeelv++yLk+k+++++l++ e i+++diyk++PwdLp k++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ ++
  RrC19533_p1  16 LLPGFRFHPTDEELVSFYLKRKIQHNPLSI-ELIRQLDIYKYDPWDLP-KFATGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSeGN 111
                  579***************************.89***************.777899***************************************9566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +glkk+Lvfykgra kg+ktdW+mhe+r+
  RrC19533_p1 112 KCIGLKKSLVFYKGRAAKGVKTDWMMHEFRM 142
                  67***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5612145IPR003441NAC domain
PROSITE profilePS5100552.99516167IPR003441NAC domain
PfamPF023652.1E-2618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGERNNDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKIQH NPLSIELIRQ LDIYKYDPWD  60
LPKFATGEKE WYFYCPRDRK YRNSSRPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL  120
VFYKGRAAKG VKTDWMMHEF RMPSLSEPSP SSKRFFDSPV SPNVSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-5111534153NO APICAL MERISTEM PROTEIN
1ut4_B3e-5111534153NO APICAL MERISTEM PROTEIN
1ut7_A3e-5111534153NO APICAL MERISTEM PROTEIN
1ut7_B3e-5111534153NO APICAL MERISTEM PROTEIN
3swm_A3e-5111537156NAC domain-containing protein 19
3swm_B3e-5111537156NAC domain-containing protein 19
3swm_C3e-5111537156NAC domain-containing protein 19
3swm_D3e-5111537156NAC domain-containing protein 19
3swp_A3e-5111537156NAC domain-containing protein 19
3swp_B3e-5111537156NAC domain-containing protein 19
3swp_C3e-5111537156NAC domain-containing protein 19
3swp_D3e-5111537156NAC domain-containing protein 19
4dul_A3e-5111534153NAC domain-containing protein 19
4dul_B3e-5111534153NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893851e-163AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450269.11e-120PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-108FEZ_ARATH; Protein FEZ
TrEMBLA0A397YNI41e-117A0A397YNI4_BRACM; Uncharacterized protein
TrEMBLA0A3N6R3Z21e-117A0A3N6R3Z2_BRACR; Uncharacterized protein
STRINGBra016294.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-110NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]