PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1940_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 493aa    MW: 56186.2 Da    PI: 6.4627
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1940_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.41.1e-101483887
    trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                m e g+ r++k+Ckek+en+ k+ k++keg+ ++++++  t+++fdqlea
  RrC1940_p5  1 MGELGYIRNAKKCKEKFENVYKYNKRTKEGRTGKSEGK--TYRFFDQLEA 48
                6799****************************975544..6*******85 PP
2trihelix107.11.2e-33308393187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+ gf+rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a
  RrC1940_p5 308 RWPKVEIEALIKLRTNLDTKYQENLPKGPLWEEISAGMRRLGFNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLDA 393
                 8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.329301365IPR017877Myb-like domain
SMARTSM007172.0E-4305367IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-4305364IPR009057Homeodomain-like
CDDcd122031.14E-26307372No hitNo description
PfamPF138373.6E-23307394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MGELGYIRNA KKCKEKFENV YKYNKRTKEG RTGKSEGKTY RFFDQLEALE THSTSSSLHP  60
HQQTQSQPLQ PQPLPPHNNI SSMFSTPPVT TVTPPPTTNM TPVNISSFPN ISGEFLSDNS  120
TSSSYSTSSD VEVGGSTTTT RRKKRKRKWK EFFERLMKQV VDKQEELQHK FLEAVEKREQ  180
ERMVREESWR VQEIARINRE HEILAQERSM SAAKDAAVMA FLQKFSEKTN PQGQSIPIPQ  240
PQPQHARSQM LVNNNNQQAT SQQTPQTPPP QPSHAVIPTF NTTTETVNSD QNMTPASAST  300
AGAVSSSRWP KVEIEALIKL RTNLDTKYQE NLPKGPLWEE ISAGMRRLGF NRSSKRCKEK  360
WENINKYYKK VKESNKKRPE DSKTCPYFHQ LDALYKERNN FHTNNNHNIA SSSSTSGLVK  420
PDNLVPLMVQ PEQQWPPATA TTVGATAQPD QHPPPPPQPL DHNFDDEEGT DEEEYDDEED  480
DEENQEEEEG CEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RKKRKR
2141147RKKRKRK
3142147KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477779.10.0PREDICTED: trihelix transcription factor GT-2-like
RefseqXP_018477782.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-112TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A398AB830.0A0A398AB83_BRACM; Uncharacterized protein
STRINGBra008285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-140Trihelix family protein